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There will be at least one more beta for OPNG, likely happening this afternoon (US time). Also, it looks like the OPNG points issue is finally getting sorted out: they will be scaled to 20X compared to CPU points, to account for the vastly shorter runtimes. I'm in the "who cares; we're doing science" camp on this, but there has been a vocal "why am i not being awarded points" camp as well, all the way through the series of betas. I admit that I've been confused at the amount of noise people have made about this. I know that people enjoy the gamification aspect (Exhibit A: the title of this thread), but points are the single least useful metric there is. Pretty much everyone awards badges based on runtime, and WCG's points are particularly meaningless, being scaled approximately 7X from every other BOINC project in existence, so you can't even use them to talk about cross-project performance without doing math. Edit: This ended up not being done as a separate beta run, but just as a new batch of WUs for the existing run. Currently running are batches of WUs which have been generated from already complete CPU WUs, to ensure that the results are approximately identical. I'm personally happy about this, because I have unbroken my AMD cards by installing the OpenCL portions of the AMDGPU-PRO drivers on them -- this being OCL 1.2 compliant, in contrast to the Mesa OCL driver. I didn't want the hassle, but my desire to crunch more science won out after a half-day of arguing with myself about it. I've got a really simple bash script that I'd be happy to share in the incredibly unlikely event that anyone else has also had this problem. Edit 2: Really interesting post from a WCG admin on how they build and "score" WUs for this project: quote:For a CPU work unit, we estimate they can run X jobs based on what each job has inside of it. This is based off how many atoms are in a given ligand. mdxi fucked around with this message at 06:56 on Mar 31, 2021 |
# ? Mar 30, 2021 18:53 |
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# ? Apr 24, 2024 02:31 |
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WGC OPNG progress is moving really fast now, after a glacially slow bring-up, and cautious early beta period. From one of the admins this afternoon, after yet another batch of beta WUs:quote:We are having some virtual high fives here in communications with the researchers. They have some additional checks they want to look at, but currently we are getting really good results and things look awesome. quote:I plan on adding 10 batches just to make sure the points and everything match what I'm expecting to see when we go live during production. As far as I can tell, it is, but to be 100% sure instead of 99%, I'm running these 10 extra batches. These are going to be the last 10 batches for beta as I do not plan on running any more.
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# ? Apr 1, 2021 01:39 |
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Will this allow MacOS and ARM Linux users to use GPUs for Open Pandemics?
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# ? Apr 1, 2021 19:20 |
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Vir posted:Will this allow MacOS and ARM Linux users to use GPUs for Open Pandemics? There is no Mali GPU support. Nvidia, AMD, and Intel only. People have reported both success and failure for OPNG WUs on Macbooks, so it's available -- at least for Intel GPUs. Didn't find anyone crunching on a desktop Mac in my quick search of the forums.
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# ? Apr 1, 2021 23:40 |
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There are some old Mac Pros with discrete AMD GPUs in them, and even some from Nvidia before that, but Folding@Home doesn't support any of them because there was a bug in OpenCL for MacOS back when it was more worthwhile, and MacOS has deprecated OpenCL and replaced it with Apple's own Metal API.
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# ? Apr 2, 2021 00:04 |
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Curiously, Apple has kept the legacy OpenCL (v1.2) even in its latest version of macOS; they even re-wrote it to run natively under the new Apple Silicon CPUs. Apple did this so that the current plethora of scientific software written for Intel chips would either run without modification under Rosetta, or just require a recompile with the latest Xcode with another flag set for M1 code.. I doubt you'll ever find anyone on the forums willingly running Folding@Home on a Mac because the Folding software authors are either totally uninterested in writing in old OpenCL code or feel that they don't need to give Macs GPU support, which pisses Mac users off and then they'll join a project that DOES support Apple GPUs like Einstein.. and the CPU client definitely is not really optimized on Mac. Binary Badger fucked around with this message at 04:49 on Apr 4, 2021 |
# ? Apr 4, 2021 04:26 |
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OPNG is live, but rather than the flood everyone was expecting, the current WU release rate is 1700 every 30-ish minutes (there's some randomness built in to keep people from fetching WUs on a clock, because yes that is a thing that people will do -- looking at you HSTB). Currently unknown if that's gonna increase or not. My machines have crunched 97 so far. They're very unevenly distributed across the farm (low: 0; high: 43), as you might expect for something with limited and somewhat-irregular availability. I'll be evaluating how this goes, and turning Einstein@Home back on as a low-priority project if my GPUs have consistent downtime.
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# ? Apr 7, 2021 06:31 |
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The F@H statistics page has been given a makeover. It now displays team logos for those that have it, and it has also broken the client's web frontend. SAGoons is ranked 69, but lacks a logo: https://stats.foldingathome.org/team/150 Old page: https://statsclassic.foldingathome.org/team/150
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# ? Apr 12, 2021 00:43 |
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Vir posted:The F@H statistics page has been given a makeover. It now displays team logos for those that have it, and it has also broken the client's web frontend.
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# ? Apr 12, 2021 01:28 |
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Vir posted:The F@H statistics page has been given a makeover. It now displays team logos for those that have it, and it has also broken the client's web frontend. Oh so that's why I couldn't see my total score on the web client, I was gonna ask in this thread as to why that is
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# ? Apr 12, 2021 08:21 |
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F@H has rolled back the new stats pages, because it broke the web client. This premature rollout also revealed that many third party websites were hammering the statistics API with excessive calls. F@H has only one programmer on staff, which I guess is a typical symptom of how research grants pay for PhD projects, but infrastructure and support functions are under-funded. Here's the beta page: https://statsbeta.foldingathome.org/team/150
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# ? Apr 13, 2021 09:21 |
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WCG Monthly Update - March 2021 I had been writing this up on Reddit, because Markdown is so much nicer than bbcode (can I pay the to add this now that Lowtax is dead?). But Reddit sucks balls as a community, so I quit. But I really enjoyed doing it, so I'm putting it here now. It was a quiet month overall, except for OpenPandemics becoming GPU-enabled. OpenPandemics
Africa Rainfall Project
Microbiome Immunity Project
Help Stop TB No update. Mapping Cancer Markers
Smash Childhood Cancer SCC is on hiatus from WCG's perspective, but researchers are working on the next set of targets, and working in the lab with proteins targeted by previous WCG work:
Betas This month was full of OPN GPU testing -- the first WCG project to use a GPU in several years, for a variety of reasons. OPN1 on GPU has been given the short-name OPNG, so it's easy to tell WUs apart. Here's some info from the beta:
mdxi fucked around with this message at 00:19 on Apr 19, 2021 |
# ? Apr 19, 2021 00:17 |
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OPNG stress test currently underway:quote:This afternoon around 18:00 UTC, we'll begin an extreme stress test of the World Community Grid infrastructure with the help of the OpenPandemics - COVID-19 research team in the Forli Lab. We're grateful for the support and hard work of the Forli Lab team in co-creating and refining this test, and we all look forward to seeing what our entire system can do. - This test is working on a specific target: quote:The batches for the stress test are targeting the spike protein, the most important surface protein of the virus, using a structure that was determined using cryo-electron microscopy (cryoEM) by our collaborators at the Ward lab at Scripps Research. Approximately 280 million small molecules from the ZINC database will be docked against a promising, hypothetical binding site. Our goal is to identify a few of these molecules that will bind with sufficient affinity to the spike to interfere with the replication process of SARS-CoV-2. - There's enough traffic that WCG's LBs were dropping connections and techs were/are working on it. That's all the news for now mdxi fucked around with this message at 06:30 on Apr 27, 2021 |
# ? Apr 27, 2021 06:10 |
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Spot the GPU betas and stress test:
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# ? Apr 28, 2021 03:16 |
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Pacing update on the WCG OPNG stress test:quote:We crunched through about 7.5k batches in the first 36 hours. We will continue with this pace until the full 30k batches have been completed.
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# ? Apr 28, 2021 18:15 |
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I just watched Dr. Ian Cutress's Hot Chips 2021 preview and discovered that there is an ASIC designed for molecular dynamics, which is the class of software that most biomedical grid computing projects are based around (Folding, Rosetta, etc.). Apparently they're going to be talking about their new design, the Anton 3. I don't think they sell them at all though, so even if those packages were ported to run on it it wouldn't do us any good
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# ? May 19, 2021 02:23 |
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John Chodera from Folding@Home posted a status update about the Covid Moonshot:quote:To very quickly update where we are:
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# ? Jun 14, 2021 15:01 |
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After way more downtime than anticipated (one day shy of two months) due to moving and various related fuckery, I'm coming back online and I'm really happy about that. In other news, AMD is still handing out small (480 core) EPYC clusters to support COVID research. https://www.hpcwire.com/2021/07/16/amd-donates-neowise-cluster-to-genci-inria-for-covid-19-research/
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# ? Jul 17, 2021 03:42 |
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July WCG Update A surprising amount has happened since I went on hiatus, including a very surprising (and, I believe, unprecedented) event which I'm going to lead with. Microbiome Immunity Project A MIP Researcher posted:With the recent advent of new protein folding techniques based on AI and deep learning, it is now possible to compute these structures hundreds of times faster than when we started the project. We are therefore drawing the project to a close at the end of June, bridging results to new, faster techniques that can be performed on traditional high-performance compute clusters and do not need the power of World Community Grid. WCG posted:This month, researchers are concentrating on further analysis and writing for <another paper>, which they believe will have broad appeal to other scientists working on the microbiome and in related fields. MIP was far from done, and it's true that there are large-scale data analysis techniques extant today that weren't as feasible 5 years ago, but personally what I feel like the feelgood messaging from the researchers is papering over is "we can buy piles of cores for cheap now, and we don't have to use volunteers anymore". Just look at my previous post for an example. Some people are also speculating that this move has to do with the fact that WCG requires an open data commitment from researchers, but of course there's no proof behind that. Africa Rainfall Project WCG posted:At the current pace, the project will be able to simulate an entire rainy season by the end of 2021. However, our tech team has determined that we can send out work more quickly. Smash Childhood Cancer WCG posted:Since early this year, the researchers have been analyzing data from work run on World Community Grid. Help Stop TB WCG posted:In October 2020, the World Health Organization released the most recent global statistics on TB, including the following: Mapping Cancer Markers WCG posted:Last month, we asked current volunteers who were not already donating computing power to this project to start contributing. Thank you to everyone who responded to this request! Below are the results so far: OpenPandemics OPN Researchers posted:In late 2020, we announced the selection of 70 compounds (from an original group of approximately 20,000) that could be promising to be investigated as potential inhibitors of the virus that causes COVID-19. Lab testing is currently underway for some of these compounds (see the end of this report for details). WCG posted:Since the update was published, they've also begun looking ahead to possibly testing a second set of compounds. They will share further details if and when this happens.
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# ? Jul 30, 2021 08:49 |
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Thanks for the updates mdxi! It's nice to be able to read all the news in one place and in one post.
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# ? Jul 30, 2021 19:27 |
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I've had a node down since moving (roughly a month). Finally got around to diagnosing it yesterday: dead SSD. Here's the interesting/annoying thing though: instead of posting but failing to boot, the failure mode was to sit at the UEFI logo screen forever, regardless of keyboard input. This might be a good reason to disable boot splash on all my nodes -- I never bothered because commodity UEFI on consumer hardware gives you poo poo for diagnosing early boot problems. Since bringing everything back online, I've had to use PPT settings (thanks, AMD!) to dramatically under-watt everything. As suboptimal as my old apartment was, with its under-specced window unit AC, the fact that the nodes were in the room with the AC meant that they ran cooler there. Here, with proper central HVAC, the irony is that the nodes are now off in a bedroom that I'm using as my office and while airflow is fine, this room becomes a hotspot that the centrally-located thermostat doesn't care about. Given (1) this new reality, and (2) that many-core CPUs are becoming the norm across all market segments, and (3) the performance of chips like Apple's M1, I'm (4) starting to think that my next round of upgrades -- which is likely a year away, minimum -- might be in a more efficiency-oriented direction. I've always been a huge fan of efficient computing, but when Ryzen happened and there were suddenly so many cores available for so few dollars, I got greedy and pivoted toward just wanting to be able to crunch more. The other option would be to go in the other direction, and have, say, two Threadripper based nodes instead. But that would be paying for a lot of hardware I don't need. Plugging a 64-core CPU with 144 (or whatever) PCIe lanes into a $500 mobo, then attaching a single 120G NVMe drive and a low-end GPU feels wasteful in the extreme. Obvs, the answer is "wait and see". What's everybody else doing/thinking, hardware-wise?
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# ? Aug 16, 2021 19:03 |
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Maybe try distributing your nodes around the house rather than concentrating them in a single room. Then you would have less of a hotspot in your office for the central air to deal with. Since networking speed isn't all that important for this application you could connect them via wifi if you don't want to run ethernet everywhere. As for hardware I just use what I have and don't buy anything specifically for distributed number crunching. In the winter I will spin up my desktop and use it as a space heater, and my desktop-class "server" in the basement can crunch year round.
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# ? Aug 16, 2021 19:49 |
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Yeah, that's the thermally optimal solution. Unfortunately I am now an old who (I know this may be hard to believe) is over hardware for hardware's sake. I don't want PCs scattered around my house anymore For now I've actually just reduced their power usage even more. I'm down to 55W on the 3900s and 65W on the 3950s. Despite their higher limit the 3950s are running cooler because each core is getting so much less power -- they're now basically running at 2GHz, while the 3900s are still hitting around 2600MHz. PBO is the best thing AMD has ever done, in my opinion. I'm sure the other 7 people in the universe who dramatically underwatt their machines feel the same way. mdxi fucked around with this message at 01:40 on Aug 20, 2021 |
# ? Aug 20, 2021 01:38 |
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mdxi posted:Here, with proper central HVAC, the irony is that the nodes are now off in a bedroom that I'm using as my office and while airflow is fine, this room becomes a hotspot that the centrally-located thermostat doesn't care about.
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# ? Aug 25, 2021 12:42 |
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mdxi posted:
I'm glad you asked about this because I noticed something yesterday while looking at efficiencies. (Mind you, this is all for F@H so my main concern is hosting GPUs, but) my Threadripper 1900x is VASTLY outclassed by both my 5800x and my 3600x. Like, by 3x. Was there an instruction set that first gen didn't get that's important? Don't recall. Now, both of the non-Threadripper machines are only hosting a GPU apiece, for F@H purposes, you want a thread per GPU available to feed it, so it's really only playing with 12 cores, but still. All that observation is to say, you gotta pay to play, and yes, for BONIC only usage I think you'd get more bang for buck just building 2 or maybe even 3 Ryzen nodes for the cost of a single modern Threadripper, if long-term efficiency is your goal and these are always-on crunchers even considering modern, idiotic hardware costs. (Microcenter combos would be your friend, here.)
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# ? Aug 25, 2021 14:24 |
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mdxi posted:For now I've actually just reduced their power usage even more. I'm down to 55W on the 3900s and 65W on the 3950s. Despite their higher limit the 3950s are running cooler because each core is getting so much less power -- they're now basically running at 2GHz, while the 3900s are still hitting around 2600MHz. https://forums.somethingawful.com/showthread.php?threadid=3817104&pagenumber=597&perpage=40&userid=0#post517091802 I use 1usmus tools for auto OC, I'd use the ram OC calculator that he also wrote, but I foolishly bought ram not explicitly on my mobos compatible list and i'm dumb. I also use 1usmus power plan. (I'm aware you undervolt, it does that too as well as OC) Do you run ram stock? I'll fold in winter. Quaint Quail Quilt fucked around with this message at 16:24 on Aug 25, 2021 |
# ? Aug 25, 2021 16:21 |
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mdxi posted:Here, with proper central HVAC, the irony is that the nodes are now off in a bedroom that I'm using as my office and while airflow is fine, this room becomes a hotspot that the centrally-located thermostat doesn't care about. Vir posted:But the money spent on HVAC re-design might not make it worth it. Depends how long you're going to use the room like that, the projected future cost of energy, etc. While it wouldn't be as effective as a full HVAC redesign, you could move toward smart thermostats to help with hot spot rooms like that. I have an ecobee thermostat, and I bought two of their temperature/occupancy sensors for my office and bedroom. The main reason for buying them was a similar situation as this: my office is the farthest room from the AC and it's got 2 windows, 3 computers, and plenty of other tech stuff running (plus me) to warm the room all day. So, having a little sensor on the wall to tell the thermostat, "hey, I'm in here and the room is hot, please make it cooler", is a nice benefit.
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# ? Aug 25, 2021 16:59 |
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Crunchy Black posted:my Threadripper 1900x is VASTLY outclassed by both my 5800x and my 3600x. Like, by 3x. Was there an instruction set that first gen didn't get that's important? Zen/Zen+ took 2 cycles to do AVX2. Zen2 dropped that to a single cycle, which led to enormous uplift for workloads using vector ops. On top of that, a Zen3 core is 1.4X as fast as a Zen core, clock for clock, due to accumulated IPC gains (3% for Zen+, 15% for Zen2, 19% for Zen3). So Zen3 would retire an AVX2 instruction 2.8X faster than a Zen core at the same clockspeed. mdxi fucked around with this message at 17:14 on Aug 25, 2021 |
# ? Aug 25, 2021 17:12 |
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Here's an article on the Anton 3 -- a custom-built, 528 core supercomputer optimized to do molecular dynamics processing, which is what an awful lot of BOINC projects (Folding, Rosetta, and about half of WCG to name a few) are doing. https://www.nextplatform.com/2021/08/25/the-huge-payoff-of-extreme-co-design-in-molecular-dynamics/
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# ? Aug 25, 2021 21:56 |
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WCG Monthly Update - August 2021 Mapping Cancer Markers quote:Thanks to the volunteers who responded to our recent request for additional donated computing time for Mapping Cancer Markers! The project continues to speed up; according to our tech team, it's now running approximately 30 percent faster than it was a month ago (which was already a faster pace than normal). Help Stop TB quote:With the recent addition of new team members, the researchers are making decisions about how to proceed with two papers that are in the works. They are currently running tests and re-checking analyses for Paper 1 using new methods they recently developed. Once they've completed these analyses, they will determine the best direction for Paper 2. Smash Childhood Cancer quote:Japanese government requests input from Dr. Nakagawara Africa Rainfall Project quote:In last month's update, we asked volunteers who were already contributing to this project to consider making a change to their World Community Grid settings which would allow them to process more than one work unit at a time. OpenPandemics quote:The research team recently sent 600 batches of accelerated work to World Community Grid. These batches containined simulated experiments on several important binding sites and additional compounds that could be promising as potential treatments.
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# ? Sep 1, 2021 06:22 |
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Out of curiosity, what is the status of BOINC on Power architectures? I’m hoping to build a Raptor Computing Power9 machine and was wondering what projects I could contribute to. I’ve had my 7940x+RTX 3070 throwing work at Einstein@Home for a while.
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# ? Sep 1, 2021 18:36 |
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Short answer: I can't find any in a few minutes of searching. Long answer -- on the client side, BOINC has two parts: (1) the BOINC client itself, which acts as a scheduler and network transfer client, and (2) the application binaries provided by the projects that you attach BOINC to, which are downloaded and run transparently by the BOINC client I would not be surprised if someone, or some distro, has ported the BOINC client to Power. My understanding is that it's pretty straightforward. I have been unable to find projects that have built Power binaries of their application code. They tend to be short on resources of all sorts -- that's almost an "ipso facto" of BOINC usage. My best guess would have been Folding, because they roll their own client and are funded by Stanford (who have plenty of money and nerds), but even they don't have a Power binary. How's x86 binary translation on Power these days, I guess?
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# ? Sep 1, 2021 21:24 |
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mdxi posted:Short answer: I can't find any in a few minutes of searching. Sorta bearable. I don't have direct experience with it yet but QEMU can apparently get the job done. This makes me wonder how hard it would be to take a client executable intended for a Power Mac and then bludgeon it about the face and neck to make it into a starting point for a native Power executable. I also wonder if any BOINC projects have bothered to maintain those in the year 2021. The G5 was basically Power4 with a grafted-on Altivec unit, a few alterations, and hobbled cache, after all. edit: It looks like ppc64-linux-gnu is supported, but that nobody's currently stepping up to bat. Dang. Hasturtium fucked around with this message at 22:50 on Sep 1, 2021 |
# ? Sep 1, 2021 22:40 |
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I joined the something awful Milkyway@home team!
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# ? Sep 7, 2021 13:11 |
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IBM has announced that they will no longer be funding or hosting World Community Grid. The project, in its entirety, will be transferred to the Krembil Research Institute, which is a unit of Toronto's University Health Network. This is a link to the full announcement; my summary of the announcement and QA thread (linked in announcement) follows: https://www.worldcommunitygrid.org/about_us/viewNewsArticle.do?articleId=732
Edit: more info added as it becomes available
mdxi fucked around with this message at 00:07 on Sep 14, 2021 |
# ? Sep 13, 2021 15:51 |
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The Covid Moonshot (of which Folding@Home is a part) is getting a 8 million GBP grant from Wellcome and the Covid-19 Therapeutics Accelerator to develop a treatment for coronaviruses. Press release: COVID Moonshot funded by COVID-19 Therapeutics Accelerator to rapidly develop a safe, globally accessible and affordable antiviral pill News post on Folding@Home: https://foldingathome.org/2021/09/27/covid-moonshot-wellcome-trust-funding/?lng=en John Chodera posted:This funding will enable the Moonshot to rapidly complete its final stages of lead optimization and perform the preclinical studies needed to reach the equivalent of Investigational New Drug (IND) filings to begin clinical trials.
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# ? Sep 28, 2021 09:31 |
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This is super cool. I have switched my GPUs over to Folding, attached to team SAGoons.
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# ? Sep 28, 2021 19:40 |
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Well, after a day of running Folding, I am now unhappy with most of my GPUs. They were very much an afterthought in my boxes, and in the lead-up to OpenPandemics going GPU-enabled, only 3 or my 6 machines even had GPUs slotted. When the OPNG alpha was announced I scrambled to get cards, and since the GPU crunch was already underway I had to take what I could get. That meant that I ended up with this situation:
I crunch on Linux, where the driver situation has been very interesting since AMDGPU happened. Prior to that, it was generally agreed that if you wanted to do anything other than display a desktop on a linux machine, you wanted an Nvidia GPU -- because as terrible as the drivers were compared to Windows, they were still far better than what AMD could occasionally be bothered to poo poo out. With the AMDGPU driver that flip-flopped: support and bugfixes were now much better with AMD, and in some cases the Linux driver outperformed Windows. In terms of compute however, nothing has changed. CUDA still outperforms OpenCL, and more projects support CUDA. ROCm support (supposedly AMD's answer to CUDA) has moved very, very slowly on the AMD side and I'm not aware of any projects which actually use it. Meanwhile, if you want OpenCL 2.2 support (a spec which was released in 2017), you have to install the AMDGPU-PRO drivers rather than the standard one that comes with every distro. So it was a hassle to get the 550s going, and yeah they sucked a little, but on OPNG the WUs were small enough that the performance deltas were insignificant. Who cares if something takes 40 seconds instead of 30? Folding is a whole other story though. These WUs are chunky, taking 6-8 hours on my 1650s and a little over 2 days on the RX 550s. That's not a 30% delta anymore; it's like 700%. Even the 750Ti, which is an older card, is roughly twice as fast as the 550s. That performance is so bad that it almost feels like it would be a net positive to just turn the 550s off. Also, if you were counting, you may have noticed that I only listed 5 GPUs for 6 machines. I'm currently down one, so that node isn't contributing to Folding at all. I guess it's time to start shopping for hilariously overpriced 1050/1650s on eBay because you still can't buy new GPUs, and even if I could there is no such thing as a 2050/3050, and I don't want anything that needs more than 75W. I'm suddenly genuinely interested in how Intel's dGPUs are going to perform and how available they'll be, since (1) leaks indicate that there will be a 75W entry part and (2) Intel usually has exceptional driver support on Linux. mdxi fucked around with this message at 18:49 on Sep 29, 2021 |
# ? Sep 29, 2021 18:43 |
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I know what you mean about AMD GPU support - I messed around a lot with that in Linux until my AMD card became obsolete in terms of PPD. Folding@Home has beta support for Intel GPUs. So far, some projects can be folded on integrated Intel GPUs, but the reason they're even bothering with this support is in anticipation of higher powered discrete Intel GPUs.
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# ? Sep 29, 2021 19:09 |
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# ? Apr 24, 2024 02:31 |
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mdxi posted:Well, after a day of running Folding, I am now unhappy with most of my GPUs. They were very much an afterthought in my boxes, and in the lead-up to OpenPandemics going GPU-enabled, only 3 or my 6 machines even had GPUs slotted. When the OPNG alpha was announced I scrambled to get cards, and since the GPU crunch was already underway I had to take what I could get. That meant that I ended up with this situation: e: found it and it was EXACTLY a year ago https://www.pcgamer.com/nvidia-cuda...20acceleration.
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# ? Sep 29, 2021 20:18 |